PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004509968.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 349aa    MW: 37881 Da    PI: 8.9223
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004509968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1062.3e-3352109359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v YkeClkNhAa+lGgha+DGCgEfmps++ + +++++lkCaACgCHRnFHRr+++e
  XP_004509968.1  52 VVSYKECLKNHAAALGGHALDGCGEFMPSSSVNlNDPRSLKCAACGCHRNFHRRDPQE 109
                     689**************************99999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-1552106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.8E-2853107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-3155106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08455106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-17224293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28229294IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-25235292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDMTIDADAK TPPSTQPNNT TTLKSSPFTN GTHKRHQLTI TPPPHQPPPS MVVSYKECLK  60
NHAAALGGHA LDGCGEFMPS SSVNLNDPRS LKCAACGCHR NFHRRDPQEH IITTTAATTN  120
NNFVSCIYTT PSTTVPPPQP PLPQSHRGPI SQSTSPSQST SPSQSPSPIS SPSSPPPLSH  180
LPPSSYHTSA PHMLLALGNA YSTTPPTTSN HDQHHQRHIN FSSSVVKIEN NPSGKKRYRT  240
KFSKEQKEKM QKFSEKLGWR MQKGDDGLVQ KFCNDVGVSR GVFKVWMHNN KNKRSESDVG  300
IGIGIGDQNV DDKNNDGGGS GFRSDINNEI HTSEDGCVNN VHVSSVNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212362971879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004509968.10.0PREDICTED: zinc-finger homeodomain protein 11-like
TrEMBLA0A072U1Q41e-110A0A072U1Q4_MEDTR; Homeobox domain, ZF-HD class protein
STRINGGLYMA07G35760.26e-91(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-26homeobox protein 34